PUBLICATIONS

Molecular simulations of IDPs: From ensemble generation to IDP interactions leading to disorder-to-order transitions
H. Fatafta, S. Samantray, A. Sayyed-Ahmad, O. Coskuner-Weber, B. Strodel
Prog. Mol. Biol. Transl. Sci. 183, 135-185 (2021) [link]
Edited by V. N. Uversky, Elsevier (2021). [link]

Computer simulations of protein-membrane systems. In: Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly
J. Loschwitz, O. O. Olubiyi, J. S. Hub, B. Strodel, C. S.Poojari
Prog. Mol. Biol. Transl. Sci. 170, 273-403 (2020) [link]
Edited by B. Strodel and B. Barz, Elsevier (2020). [link]

Functional Amyloids.
Carballo-Pacheco M., Barz B. and Strodel B.
Proceedings of the 46th IFF Spring School Functional Soft Matter, 23 February – 06 March 2015, Jülich, Germany.

Thermodynamics and kinetics of amyloid aggregation from atomistic simulations.
Barz B. and Strodel B.
Proceedings of the Conference Physical Biology of Proteins and Peptides: Theory, Experiment and Simulation, 18 – 20 February 2015, Mexico City, Mexico.

Thermodynamics of Protein Aggregation.
K. L. Osborne, B. Barz, M. Bachmann, and B. Strodel. Phys. Proc., 53, 90-95 (2014) [link]
Proceedings of the 26th Workshop on Recent Developments in Computer Simulation Studies in Condensed Matter Physics, Feb 25-Mar 1, 2013, Athens, Georgia, USA.

Secondary Structure Propensities of the Amyloid β-Peptide Aβ1−42 as Influenced by pH and a D-Peptide.
O. O. Olubiyi, B. Strodel.
In `From Computational Biophysics to Systems Biology (CBSB11)’, Proceedings, 20-22 July 2011, Julich, Germany, ISBN 978-3-89336-748-1, pp. 145-150 (2012).

Coarse Grained Simulation of Amyloid Aggregators.
K. Osborne, M. Bachmann, B. Strodel.
In `From Computational Biophysics to Systems Biology (CBSB11)’, Proceedings, 20-22 July 2011, Julich, Germany, ISBN 978-3-89336-748-1, pp. 151-155 (2012).

Modeling Transmembrane Amyloid-β Structures: Aβ-Membrane Interactions.
C. Poojari, B. Strodel.
In `From Computational Biophysics to Systems Biology (CBSB11)’, Proceedings, 20-22 July 2011, Julich, Germany, ISBN 978-3-89336-748-1, pp. 157-162 (2012).

Pathways and Rates for Structural Transformations of Peptides and Proteins. In: Energy Flow in Proteins.
D.J. Wales, J.M. Carr, M. Khalili, V. de Souza, B. Strodel, and C.S. Whittleston.
Edited by D.Leitner and J.Straub, Taylor and Francis/CRC Press, 315-340 (2009). [link]